Index

A

AbstractGenotypeDatabase (class in forward.genotype) AbstractPhenotypeDatabase (class in forward.phenotype.db)

AbstractTask (class in forward.tasks) api_get_yaml_configuration() (in module forward.backend)

B

Backend (class in forward.backend)

C

check_skat() (forward.tasks.SKATTest static method)

CSVPhenotypeDatabase (class in forward.phenotype.db)

D

done() (forward.tasks.AbstractTask method)

E

ExcelPhenotypeDatabase (class in forward.phenotype.db) exclude_correlated() (forward.phenotype.db.AbstractPhenotypeDatabase method) exclude_samples() (forward.genotype.MemoryImpute2Geno method)

experiment_init() (forward.genotype.AbstractGenotypeDatabase method) (forward.genotype.MemoryImpute2Geno method) (forward.genotype.PlinkGenotypeDatabase method) ExperimentResult (class in forward.experiment)

F

filter_completion() (forward.genotype.MemoryImpute2Geno method) (forward.genotype.PlinkGenotypeDatabase method) filter_maf() (forward.genotype.MemoryImpute2Geno method) (forward.genotype.PlinkGenotypeDatabase method) filter_name() (forward.genotype.AbstractGenotypeDatabase method) (forward.genotype.MemoryImpute2Geno method) (forward.genotype.PlinkGenotypeDatabase method) forward.backend (module)

forward.genotype (module) forward.phenotype.db (module) forward.tasks (module)

G

get_bonferonni() (forward.backend.Backend method) get_configuration() (forward.backend.Backend method) get_correlation_matrix() (forward.phenotype.db.AbstractPhenotypeDatabase method) get_genotypes() (forward.genotype.AbstractGenotypeDatabase method) (forward.genotype.MemoryImpute2Geno method) (forward.genotype.PlinkGenotypeDatabase method) get_meta() (forward.tasks.AbstractTask method) get_outcome_vector() (forward.backend.Backend method) get_phenotype_relation_threshold() (forward.phenotype.db.AbstractPhenotypeDatabase method) get_phenotype_vector() (forward.phenotype.db.AbstractPhenotypeDatabase method) get_phenotypes() (forward.phenotype.db.AbstractPhenotypeDatabase method) get_related_phenotypes_exclusions() (forward.backend.Backend method)

get_results() (forward.backend.Backend method) get_sample_order() (forward.genotype.AbstractGenotypeDatabase method) (forward.genotype.PlinkGenotypeDatabase method) (forward.phenotype.db.AbstractPhenotypeDatabase method) get_task_info() (forward.backend.Backend method) get_tasks() (forward.backend.Backend method) get_variable_corrplot() (forward.backend.Backend method) get_variable_histogram() (forward.backend.Backend method) get_variable_normal_qqplot() (forward.backend.Backend method) get_variables() (forward.backend.Backend method) get_variants() (forward.backend.Backend method)

I

initialize_application() (in module forward.backend)

L

LinearTest (class in forward.tasks) LinearTestResults (class in forward.tasks)

load_samples() (forward.genotype.AbstractGenotypeDatabase static method) LogisticTest (class in forward.tasks)

M

MemoryImpute2Geno (class in forward.genotype)

P

p_value_qq_plot() (forward.backend.Backend method)

PlinkGenotypeDatabase (class in forward.genotype)

Q

query_variants() (forward.genotype.AbstractGenotypeDatabase method)

R

run_task() (forward.tasks.AbstractTask method) (forward.tasks.LogisticTest method) (forward.tasks.SKATTest method)

S

set_experiment_variables() (forward.phenotype.db.AbstractPhenotypeDatabase method) set_meta() (forward.tasks.AbstractTask method)

set_sample_order() (forward.phenotype.db.AbstractPhenotypeDatabase method) SKATTest (class in forward.tasks)

V

validate_sample_sequences() (forward.phenotype.db.AbstractPhenotypeDatabase static method)

Variant (class in forward.genotype)