Index

A | B | C | D | E | F | G | I | L | M | P | Q | R | S | V

A

AbstractGenotypeDatabase (class in forward.genotype)
AbstractPhenotypeDatabase (class in forward.phenotype.db)
AbstractTask (class in forward.tasks)
api_get_yaml_configuration() (in module forward.backend)

B

Backend (class in forward.backend)

C

check_skat() (forward.tasks.SKATTest static method)
CSVPhenotypeDatabase (class in forward.phenotype.db)

D

done() (forward.tasks.AbstractTask method)

E

ExcelPhenotypeDatabase (class in forward.phenotype.db)
exclude_correlated() (forward.phenotype.db.AbstractPhenotypeDatabase method)
exclude_samples() (forward.genotype.MemoryImpute2Geno method)
experiment_init() (forward.genotype.AbstractGenotypeDatabase method)
(forward.genotype.MemoryImpute2Geno method)
(forward.genotype.PlinkGenotypeDatabase method)
ExperimentResult (class in forward.experiment)

F

filter_completion() (forward.genotype.MemoryImpute2Geno method)
(forward.genotype.PlinkGenotypeDatabase method)
filter_maf() (forward.genotype.MemoryImpute2Geno method)
(forward.genotype.PlinkGenotypeDatabase method)
filter_name() (forward.genotype.AbstractGenotypeDatabase method)
(forward.genotype.MemoryImpute2Geno method)
(forward.genotype.PlinkGenotypeDatabase method)
forward.backend (module)
forward.genotype (module)
forward.phenotype.db (module)
forward.tasks (module)

G

get_bonferonni() (forward.backend.Backend method)
get_configuration() (forward.backend.Backend method)
get_correlation_matrix() (forward.phenotype.db.AbstractPhenotypeDatabase method)
get_genotypes() (forward.genotype.AbstractGenotypeDatabase method)
(forward.genotype.MemoryImpute2Geno method)
(forward.genotype.PlinkGenotypeDatabase method)
get_meta() (forward.tasks.AbstractTask method)
get_outcome_vector() (forward.backend.Backend method)
get_phenotype_relation_threshold() (forward.phenotype.db.AbstractPhenotypeDatabase method)
get_phenotype_vector() (forward.phenotype.db.AbstractPhenotypeDatabase method)
get_phenotypes() (forward.phenotype.db.AbstractPhenotypeDatabase method)
get_related_phenotypes_exclusions() (forward.backend.Backend method)
get_results() (forward.backend.Backend method)
get_sample_order() (forward.genotype.AbstractGenotypeDatabase method)
(forward.genotype.PlinkGenotypeDatabase method)
(forward.phenotype.db.AbstractPhenotypeDatabase method)
get_task_info() (forward.backend.Backend method)
get_tasks() (forward.backend.Backend method)
get_variable_corrplot() (forward.backend.Backend method)
get_variable_histogram() (forward.backend.Backend method)
get_variable_normal_qqplot() (forward.backend.Backend method)
get_variables() (forward.backend.Backend method)
get_variants() (forward.backend.Backend method)

I

initialize_application() (in module forward.backend)

L

LinearTest (class in forward.tasks)
LinearTestResults (class in forward.tasks)
load_samples() (forward.genotype.AbstractGenotypeDatabase static method)
LogisticTest (class in forward.tasks)

M

MemoryImpute2Geno (class in forward.genotype)

P

p_value_qq_plot() (forward.backend.Backend method)
PlinkGenotypeDatabase (class in forward.genotype)

Q

query_variants() (forward.genotype.AbstractGenotypeDatabase method)

R

run_task() (forward.tasks.AbstractTask method)
(forward.tasks.LogisticTest method)
(forward.tasks.SKATTest method)

S

set_experiment_variables() (forward.phenotype.db.AbstractPhenotypeDatabase method)
set_meta() (forward.tasks.AbstractTask method)
set_sample_order() (forward.phenotype.db.AbstractPhenotypeDatabase method)
SKATTest (class in forward.tasks)

V

validate_sample_sequences() (forward.phenotype.db.AbstractPhenotypeDatabase static method)
Variant (class in forward.genotype)